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Researcher Mapping Biological Functions Using Computers

Wolfgang F. Nonner, M.D., is known worldwide for his computational biology research.

Internationally, only a handful of scientists focus on the emerging field of computational biology, which uses computers to analyze and simulate the complex structures and processes found in living systems.

One expert is Wolfgang F. Nonner, M.D., a Miller School professor of physiology and biophysics. Nonner and his team of interdisciplinary colleagues recently unveiled an innovative computer model that provides valuable insights into how calcium is transferred throughout the body.

Nonner's work, which has been published in The Journal of General Physiology, May 2009, specifically focuses on the mechanisms that make it possible for calcium ions to pass across an exterior cell membrane through a protein known as an L-type calcium channel. "Modeling in biology is a well-established way to predict key atomic interactions among molecules within a complex system," Nonner says.

"We apply engineering to biological ion channels to determine what subset of physical interactions helps the channels achieve crucial biological functions," Nonner adds. "We're doing this to understand how a particular molecular function arises from a particular structure, and our modeling could have implications for heart tissue, as well as other cell types."

Nonner's work was lauded by Miller School Dean Pascal J. Goldschmidt, M.D. "The modeling provided by Wolfgang and his group is novel and provocative, and provides a new understanding of how calcium moves from one biological compartment to another," Goldschmidt says. "This development is a formidable contribution to our scientific knowledge of these processes."

Nonner's far-flung team has approximately 20 members whose disciplinary focuses include chemistry, physics and computational electronics. Miller School scientists, as well as researchers from Brigham Young University and institutions abroad, are working with Nonner.

"Even though this appears to be a completely esoteric pursuit, there is a compelling, practical reason for this work," Nonner says. "I belong to a group of scientists and engineers who are creating the technology to build molecular machines. Constructing such machines tells us how well we have understood the physics of biological function, and opens a path for biomedical applications."

The research Nonner and his team are producing is of interest to the fields of nanotechnology, molecular modeling and computational biomodeling, which is concerned with building computational models of biological systems.

Grand Rounds
Tuesday, December 01, 2009 8 a.m.
Pediatric Grand Rounds: “Update on Inflammatory Bowel Disease”
Tuesday, December 01, 2009 12 p.m.
Cardiovascular Grand Rounds: “Predicting and Preventing Stroke”
Wednesday, December 02, 2009 7:30 a.m.
Plastic Surgery Grand Rounds: “Minimizing Scars and Keloids – Update”
Wednesday, December 02, 2009 11:45 a.m.
Dermatology and Cutaneous Surgery Grand Rounds: "Catalyzing Health Care Transformation Via TeleHealth"
Thursday, December 03, 2009 6:45 a.m.
Anesthesiology Grand Rounds: "Controversies in Perioperative Pacemaker and Defibrillator Management"
Thursday, December 03, 2009 7 a.m.
Neurological Surgery Grand Rounds
Thursday, December 03, 2009 7 a.m.
Orthopaedic Grand Rounds: “Mobile Bearing Total Knee Replacement”
Thursday, December 03, 2009 7:30 a.m.
Surgical Grand Rounds/Barbara B. Williams Lecture: “Laparoscopic Liver Resection for Cancer”
Thursday, December 03, 2009 8 a.m.
Otolaryngology Grand Rounds: “Facial Reanimation”
Thursday, December 03, 2009 12 p.m.
Pathology Grand Rounds: “On Social Entrepreneurship – There is Life Outside of Pathology”
Friday, December 04, 2009 10 a.m.
Neurology Grand Rounds
Friday, December 04, 2009 12 p.m.
Psychiatry Grand Rounds: “Medical Errors Prevention, Part One”
Tuesday, December 08, 2009 8 a.m.
Pediatric Grand Rounds: “Facial Clefting and Reconstruction”
Tuesday, December 08, 2009 12 p.m.
Cardiovascular Grand Rounds
Thursday, December 10, 2009 7 a.m.
Orthopaedic Grand Rounds: "Proximal Opening Wedge Osteotomy of the First Metatarsal with Plate Fixation for Hallux Valgus"
Thursday, December 10, 2009 7:30 a.m.
Surgical Grand Rounds: “Malpractice Lawsuit Prevention”
Thursday, December 10, 2009 8 a.m.
Neurological Surgery Grand Rounds: “Neuropathology Review Conference”
Thursday, December 10, 2009 8 a.m.
Otolaryngology Grand Rounds: “Allergic Rhinitis”
Thursday, December 10, 2009 12 p.m.
Hospital Medicine Grand Rounds: “Understanding Enteral/Parenteral Nutrition - 2009”
Friday, December 11, 2009 10 a.m.
Neurology Grand Rounds: “Searching for New Approaches to Prevent Stroke”
Tuesday, December 15, 2009 8 a.m.
Pediatric Grand Rounds: "The Pathogenesis of Staphylococcus Aureus Pneumonia and the Role of Immunity"
Tuesday, December 15, 2009 12 p.m.
Cardiovascular Grand Rounds: “Chronic Kidney Disease: Can We Reduce Cardiovascular Risk?”
Thursday, December 17, 2009 7 a.m.
Orthopaedic Grand Rounds: “Thumb Carpometacarpal Joint Arthritis”
Thursday, December 17, 2009 7:30 a.m.
Surgical Grand Rounds: “Percutaneous Treatment of Aortic Valve Disease”
Thursday, December 17, 2009 8 a.m.
Neurological Surgery Grand Rounds: “Neuropathology”
Friday, December 18, 2009 10 a.m.
Neurology Grand Rounds: “Movement Disorders of Childhood”
Friday, December 18, 2009 12 p.m.
Psychiatry Grand Rounds: “Culturally-Informed Therapy for Schizophrenia”
Friday, December 18, 2009 3 p.m.
Medicine Grand Rounds: “Clinical Pharmacogenomics in Clinical Practice”
Tuesday, December 29, 2009 8 a.m.
Pediatric Grand Rounds: “TB 2009: A Perspective From Chile”
Thursday, December 31, 2009 12 p.m.
Hospital Medicine Grand Rounds: “Thrombocytopenia in the Clinical Setting - 2009”
Events
Tuesday, December 01, 2009 11 a.m. Student Members of Physicians for Human Rights Commemorate World AIDS Day with Awareness Campaign
Tuesday, December 01, 2009 12 p.m. Cell Biology and Anatomy Seminar: “Probing Mitochondrial DNA Structure with Mitochondria-Targeted DNA Methyltransferases"
Tuesday, December 01, 2009 4 p.m. Genetics and Genomics Seminar: “miRNAs, Morphology and Metastasis”
Wednesday, December 02, 2009 11:59 a.m. Gail F. Beach Memorial Visiting Lectureship: “Applications of Recurrent Brain-Computer Interfaces”
Thursday, December 03, 2009 7 a.m. Continuing Medical Education Course: "An Update in the Management of Pediatric Growth Hormone Deficiency"
Thursday, December 03, 2009 12 p.m. Microbiology and Immunology Seminar: "Hyperoxic Reversal of Hypoxia-Adenosinergic Immunosuppression in Lung Metastases"
Friday, December 04, 2009 12 p.m. Friday Noon Interdisciplinary Lecture Series/First Fridays Talks on Autism: "Toilet Training Individuals with Autism"
Friday, December 04, 2009 12 p.m. Neuroscience Center Seminar: "Control of Ion Channel Modulation, Synaptic Plasticity and Neuronal Circuits by Light"
Friday, December 04, 2009 12 p.m. Biochemistry and Molecular Biology Seminar: “Nucleosome Dynamics During DNA Replication and Repair”
Saturday, December 05, 2009 7 a.m. Bascom Palmer Presents: “Retinal and Glaucoma Imaging 2010”
Saturday, December 05, 2009 7:29 a.m. Advances in Flexible Endoscopy Course
Monday, December 07, 2009 12 p.m. Microbiology and Immunology Seminar: "TNFRSF25 Robustly Expands CD4+Foxp3+ Regulatory T Cells In Vivo"
Tuesday, December 08, 2009 9 a.m. DMAS/FRS Training Scheduled for December
Wednesday, December 09, 2009 9 a.m. The Miami Project to Cure Paralysis Seminar
Wednesday, December 09, 2009 12 p.m. Microbiology and Immunology Dissertation Seminar: “APRIL (TNFSF13) in Th1, Th2 and Th17 Responses”
Wednesday, December 09, 2009 12 p.m. Pediatric Clinical Research Forum: “Viral Time Bomb: Pediatric HCV in the State of Florida”
Thursday, December 10, 2009 10 a.m. The Buoniconti Fund to Cure Paralysis Hosts First Holiday Bazaar
Thursday, December 10, 2009 11:30 a.m. Israeli Health Care Reform Symposium
Thursday, December 10, 2009 12 p.m. Microbiology and Immunology Seminar: "Immunoglobulin Class Switch DNA Recombination and Somatic Hypermutation"
Thursday, December 10, 2009 12 p.m. Molecular and Cellular Pharmacology Seminar: “Stem Cells and Cardiomyogenesis”
Thursday, December 10, 2009 12 p.m. NIH Update Meeting
Thursday, December 10, 2009 3 p.m. Department of Medicine Seminar
Thursday, December 10, 2009 4 p.m. Miller School Dean Pascal J. Goldschmidt, M.D., to Present the 10th Biennial Gross Lecture
Friday, December 11, 2009 12 p.m. Biochemistry and Molecular Biology Seminar: "Recognition and Repair of UV-Induced DNA Damage in the Context of Chromatin"
Sunday, December 13, 2009 8:30 a.m. Walk/Run to Benefit the Diabetes Research Institute
Monday, December 14, 2009 12 p.m. Microbiology and Immunology Seminar: “Unraveling Confused CTL”
Tuesday, December 15, 2009 9 a.m. Molecular and Cellular Pharmacology Dissertation Seminar: "Vav3 Potentiation of Androgen Receptor Activity in Prostate Cancer"
Tuesday, December 15, 2009 12 p.m. Cell Biology and Anatomy Seminar: "New Perspective for ORF Phage Display as an Efficient Versatile Technology of Functional Proteomics"
Tuesday, December 15, 2009 1 p.m. Molecular and Cellular Pharmacology Special Seminar: "Androgen Receptor Corepressor NCoR is a Key Regulator of Androgen Receptor Action in Prostate Cancer"
Tuesday, December 15, 2009 4 p.m. Genetics and Genomics Seminar: "Next-Generation Sequencing: Novel Applications for Molecular Genetics"
Thursday, December 17, 2009 12 p.m. Molecular and Cellular Pharmacology Seminar: “Early Detection of Melanoma by Olfactory Receptors”
Thursday, December 17, 2009 1:15 p.m. Department of Medicine Seminar: “HIV Persistence in the Face of HAART”
Friday, December 18, 2009 11 a.m. Neurology Clinicopathological Conference
Friday, December 18, 2009 12 p.m. Biochemistry and Molecular Biology Seminar: "Common Variants in Innate Immunity Genes Influence Susceptibility to Pulmonary Tuberculosis in Three Populations"
Friday, December 18, 2009 1 p.m. Neuroscience Center Seminar: "Calcium, Selective Neurodegeneration and Protection in Parkinson's Disease"
Friday, December 18, 2009 3 p.m. Liberty City Toy Drive
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Senior Vice President for Medical Affairs and Dean
University of Miami Miller School of Medicine
CEO, University of Miami Health System
Pascal J. Goldschmidt, M.D.

Executive Editor
Associate Vice President for Communications
Christine Morris

Editor
Jenny Prather

Contributors
Maya Bell
Dwayne Campbell
Jeanne Antol Krull
Lisa Worley


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